How to check the presence of a given numpy array in a larger-shape numpy array?











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I guess the title of my question might not be very clear..



I have a small array, say a = ([[0,0,0],[0,0,1],[0,1,1]]). Then I have a bigger array of a higher dimension, say b = ([[[2,2,2],[2,0,1],[2,1,1]],[[0,0,0],[3,3,1],[3,1,1]],[...]]).



I'd like to check if one of the elements of a can be found in b. In this case, I'd find that the first element of a [0,0,0] is indeed in b, and then I'd like to retrieve the corresponding index in b.



I'd like to do that avoiding looping, since from the very little I understood from numpy arrays, they are not meant to be iterated over in a classic way. In other words, I need it to be very fast, because my actual arrays are quite big.



Any idea?
Thanks a lot!



Arnaud.










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    up vote
    1
    down vote

    favorite












    I guess the title of my question might not be very clear..



    I have a small array, say a = ([[0,0,0],[0,0,1],[0,1,1]]). Then I have a bigger array of a higher dimension, say b = ([[[2,2,2],[2,0,1],[2,1,1]],[[0,0,0],[3,3,1],[3,1,1]],[...]]).



    I'd like to check if one of the elements of a can be found in b. In this case, I'd find that the first element of a [0,0,0] is indeed in b, and then I'd like to retrieve the corresponding index in b.



    I'd like to do that avoiding looping, since from the very little I understood from numpy arrays, they are not meant to be iterated over in a classic way. In other words, I need it to be very fast, because my actual arrays are quite big.



    Any idea?
    Thanks a lot!



    Arnaud.










    share|improve this question


























      up vote
      1
      down vote

      favorite









      up vote
      1
      down vote

      favorite











      I guess the title of my question might not be very clear..



      I have a small array, say a = ([[0,0,0],[0,0,1],[0,1,1]]). Then I have a bigger array of a higher dimension, say b = ([[[2,2,2],[2,0,1],[2,1,1]],[[0,0,0],[3,3,1],[3,1,1]],[...]]).



      I'd like to check if one of the elements of a can be found in b. In this case, I'd find that the first element of a [0,0,0] is indeed in b, and then I'd like to retrieve the corresponding index in b.



      I'd like to do that avoiding looping, since from the very little I understood from numpy arrays, they are not meant to be iterated over in a classic way. In other words, I need it to be very fast, because my actual arrays are quite big.



      Any idea?
      Thanks a lot!



      Arnaud.










      share|improve this question















      I guess the title of my question might not be very clear..



      I have a small array, say a = ([[0,0,0],[0,0,1],[0,1,1]]). Then I have a bigger array of a higher dimension, say b = ([[[2,2,2],[2,0,1],[2,1,1]],[[0,0,0],[3,3,1],[3,1,1]],[...]]).



      I'd like to check if one of the elements of a can be found in b. In this case, I'd find that the first element of a [0,0,0] is indeed in b, and then I'd like to retrieve the corresponding index in b.



      I'd like to do that avoiding looping, since from the very little I understood from numpy arrays, they are not meant to be iterated over in a classic way. In other words, I need it to be very fast, because my actual arrays are quite big.



      Any idea?
      Thanks a lot!



      Arnaud.







      numpy






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      share|improve this question








      edited Nov 19 at 8:09









      Aqueous Carlos

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      asked Nov 19 at 7:51









      Arnaud

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          1 Answer
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          I don't know of a direct way, but I here's a function that works around the problem:



          import numpy as np

          def find_indices(val, arr):
          # first take a mean at the lowest level of each array,
          # then compare these to eliminate the majority of entries
          mb = np.mean(arr, axis=2); ma = np.mean(val)
          Y = np.argwhere(mb==ma)
          indices =
          # Then run a quick loop on the remaining elements to
          # eliminate arrays that don't match the order
          for i in range(len(Y)):
          idx = (Y[i,0],Y[i,1])
          if np.array_equal(val, arr[idx]):
          indices.append(idx)

          return indices

          # Sample arrays
          a = np.array([[0,0,0],[0,0,1],[0,1,1]])
          b = np.array([ [[6,5,4],[0,0,1],[2,3,3]],
          [[2,5,4],[6,5,4],[0,0,0]],
          [[2,0,2],[3,5,4],[5,4,6]],
          [[6,5,4],[0,0,0],[2,5,3]] ])



          print(find_indices(a[0], b))
          # [(1, 2), (3, 1)]
          print(find_indices(a[1], b))
          # [(0, 1)]


          The idea is to use the mean of each array and compare this with the mean of the input. np.argwhere() is the key here. That way you remove most of the unwanted matches, but I did need to use a loop on the remainder to avoid the unsorted matches (this shouldn't be too memory-consuming). You'll probably want to customise it further, but I hope this helps.






          share|improve this answer





















          • Thanks for the suggestion! Indeed such kind of workaround is a help!
            – Arnaud
            Nov 20 at 15:20











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          1 Answer
          1






          active

          oldest

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          1 Answer
          1






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes








          up vote
          1
          down vote













          I don't know of a direct way, but I here's a function that works around the problem:



          import numpy as np

          def find_indices(val, arr):
          # first take a mean at the lowest level of each array,
          # then compare these to eliminate the majority of entries
          mb = np.mean(arr, axis=2); ma = np.mean(val)
          Y = np.argwhere(mb==ma)
          indices =
          # Then run a quick loop on the remaining elements to
          # eliminate arrays that don't match the order
          for i in range(len(Y)):
          idx = (Y[i,0],Y[i,1])
          if np.array_equal(val, arr[idx]):
          indices.append(idx)

          return indices

          # Sample arrays
          a = np.array([[0,0,0],[0,0,1],[0,1,1]])
          b = np.array([ [[6,5,4],[0,0,1],[2,3,3]],
          [[2,5,4],[6,5,4],[0,0,0]],
          [[2,0,2],[3,5,4],[5,4,6]],
          [[6,5,4],[0,0,0],[2,5,3]] ])



          print(find_indices(a[0], b))
          # [(1, 2), (3, 1)]
          print(find_indices(a[1], b))
          # [(0, 1)]


          The idea is to use the mean of each array and compare this with the mean of the input. np.argwhere() is the key here. That way you remove most of the unwanted matches, but I did need to use a loop on the remainder to avoid the unsorted matches (this shouldn't be too memory-consuming). You'll probably want to customise it further, but I hope this helps.






          share|improve this answer





















          • Thanks for the suggestion! Indeed such kind of workaround is a help!
            – Arnaud
            Nov 20 at 15:20















          up vote
          1
          down vote













          I don't know of a direct way, but I here's a function that works around the problem:



          import numpy as np

          def find_indices(val, arr):
          # first take a mean at the lowest level of each array,
          # then compare these to eliminate the majority of entries
          mb = np.mean(arr, axis=2); ma = np.mean(val)
          Y = np.argwhere(mb==ma)
          indices =
          # Then run a quick loop on the remaining elements to
          # eliminate arrays that don't match the order
          for i in range(len(Y)):
          idx = (Y[i,0],Y[i,1])
          if np.array_equal(val, arr[idx]):
          indices.append(idx)

          return indices

          # Sample arrays
          a = np.array([[0,0,0],[0,0,1],[0,1,1]])
          b = np.array([ [[6,5,4],[0,0,1],[2,3,3]],
          [[2,5,4],[6,5,4],[0,0,0]],
          [[2,0,2],[3,5,4],[5,4,6]],
          [[6,5,4],[0,0,0],[2,5,3]] ])



          print(find_indices(a[0], b))
          # [(1, 2), (3, 1)]
          print(find_indices(a[1], b))
          # [(0, 1)]


          The idea is to use the mean of each array and compare this with the mean of the input. np.argwhere() is the key here. That way you remove most of the unwanted matches, but I did need to use a loop on the remainder to avoid the unsorted matches (this shouldn't be too memory-consuming). You'll probably want to customise it further, but I hope this helps.






          share|improve this answer





















          • Thanks for the suggestion! Indeed such kind of workaround is a help!
            – Arnaud
            Nov 20 at 15:20













          up vote
          1
          down vote










          up vote
          1
          down vote









          I don't know of a direct way, but I here's a function that works around the problem:



          import numpy as np

          def find_indices(val, arr):
          # first take a mean at the lowest level of each array,
          # then compare these to eliminate the majority of entries
          mb = np.mean(arr, axis=2); ma = np.mean(val)
          Y = np.argwhere(mb==ma)
          indices =
          # Then run a quick loop on the remaining elements to
          # eliminate arrays that don't match the order
          for i in range(len(Y)):
          idx = (Y[i,0],Y[i,1])
          if np.array_equal(val, arr[idx]):
          indices.append(idx)

          return indices

          # Sample arrays
          a = np.array([[0,0,0],[0,0,1],[0,1,1]])
          b = np.array([ [[6,5,4],[0,0,1],[2,3,3]],
          [[2,5,4],[6,5,4],[0,0,0]],
          [[2,0,2],[3,5,4],[5,4,6]],
          [[6,5,4],[0,0,0],[2,5,3]] ])



          print(find_indices(a[0], b))
          # [(1, 2), (3, 1)]
          print(find_indices(a[1], b))
          # [(0, 1)]


          The idea is to use the mean of each array and compare this with the mean of the input. np.argwhere() is the key here. That way you remove most of the unwanted matches, but I did need to use a loop on the remainder to avoid the unsorted matches (this shouldn't be too memory-consuming). You'll probably want to customise it further, but I hope this helps.






          share|improve this answer












          I don't know of a direct way, but I here's a function that works around the problem:



          import numpy as np

          def find_indices(val, arr):
          # first take a mean at the lowest level of each array,
          # then compare these to eliminate the majority of entries
          mb = np.mean(arr, axis=2); ma = np.mean(val)
          Y = np.argwhere(mb==ma)
          indices =
          # Then run a quick loop on the remaining elements to
          # eliminate arrays that don't match the order
          for i in range(len(Y)):
          idx = (Y[i,0],Y[i,1])
          if np.array_equal(val, arr[idx]):
          indices.append(idx)

          return indices

          # Sample arrays
          a = np.array([[0,0,0],[0,0,1],[0,1,1]])
          b = np.array([ [[6,5,4],[0,0,1],[2,3,3]],
          [[2,5,4],[6,5,4],[0,0,0]],
          [[2,0,2],[3,5,4],[5,4,6]],
          [[6,5,4],[0,0,0],[2,5,3]] ])



          print(find_indices(a[0], b))
          # [(1, 2), (3, 1)]
          print(find_indices(a[1], b))
          # [(0, 1)]


          The idea is to use the mean of each array and compare this with the mean of the input. np.argwhere() is the key here. That way you remove most of the unwanted matches, but I did need to use a loop on the remainder to avoid the unsorted matches (this shouldn't be too memory-consuming). You'll probably want to customise it further, but I hope this helps.







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Nov 19 at 18:37









          John Kealy

          362




          362












          • Thanks for the suggestion! Indeed such kind of workaround is a help!
            – Arnaud
            Nov 20 at 15:20


















          • Thanks for the suggestion! Indeed such kind of workaround is a help!
            – Arnaud
            Nov 20 at 15:20
















          Thanks for the suggestion! Indeed such kind of workaround is a help!
          – Arnaud
          Nov 20 at 15:20




          Thanks for the suggestion! Indeed such kind of workaround is a help!
          – Arnaud
          Nov 20 at 15:20


















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