Tensorflow pre-trained embedding matrix part of graph





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I am currently trying to use my own pre-trained word embeddings in my tensorflow model_fn, but after a single epoch, the model building fails due to the following error;



ValueError: Fetch argument <tf.Variable 'embedding/embeddings:0' shape=(86565, 300) dtype=float32_ref> cannot be interpreted a
s a Tensor. (Tensor Tensor("embedding/embeddings:0", shape=(86565, 300), dtype=float32_ref) is not an element of this graph.)


How do I modify my code in order to maintain the embeddings in the graph over several epochs? Should I be initializing them in a different way? Or outside of the model function?



def word_embeddings_matrix():

..... load my embeddings .....

return embedding_matrix


embedding_matrix = word_embeddings_matrix()


def model_fn(features, labels, mode, params):

vocab_table = lookup.index_table_from_file(vocabulary_file='dataset/vocab.csv', num_oov_buckets=1, default_value=-1)
text = features[commons.FEATURE_COL]
words = tf.string_split(text)
dense_words = tf.sparse_tensor_to_dense(words, default_value=commons.PAD_WORD)
word_ids = vocab_table.lookup(dense_words)

padding = tf.constant([[0, 0], [0, commons.MAX_DOCUMENT_LENGTH]])
# Pad all the word_ids entries to the maximum document length
word_ids_padded = tf.pad(word_ids, padding)
word_id_vector = tf.slice(word_ids_padded, [0, 0], [-1, commons.MAX_DOCUMENT_LENGTH])

embedding_matrix = word_embeddings_matrix()

if mode == tf.estimator.ModeKeys.TRAIN:
tf.keras.backend.set_learning_phase(True)
else:
tf.keras.backend.set_learning_phase(False)

# embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
# 10, input_length=commons.MAX_DOCUMENT_LENGTH)(word_id_vector)

embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
300,
weights=[embedding_matrix],
input_length=commons.MAX_DOCUMENT_LENGTH,
trainable=True)(word_id_vector)


conv = tf.keras.layers.Conv1D(filters=64, kernel_size=2, activation='relu')(embedded_sequences)
pool = tf.keras.layers.GlobalAveragePooling1D()(conv)
drop = tf.keras.layers.Dropout(0.5)(pool)

logits = tf.keras.layers.Dense(commons.TARGET_SIZE, activation=None)(drop)

predictions = tf.nn.softmax(logits)
prediction_indices = tf.argmax(predictions, axis=1)









share|improve this question





























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    I am currently trying to use my own pre-trained word embeddings in my tensorflow model_fn, but after a single epoch, the model building fails due to the following error;



    ValueError: Fetch argument <tf.Variable 'embedding/embeddings:0' shape=(86565, 300) dtype=float32_ref> cannot be interpreted a
    s a Tensor. (Tensor Tensor("embedding/embeddings:0", shape=(86565, 300), dtype=float32_ref) is not an element of this graph.)


    How do I modify my code in order to maintain the embeddings in the graph over several epochs? Should I be initializing them in a different way? Or outside of the model function?



    def word_embeddings_matrix():

    ..... load my embeddings .....

    return embedding_matrix


    embedding_matrix = word_embeddings_matrix()


    def model_fn(features, labels, mode, params):

    vocab_table = lookup.index_table_from_file(vocabulary_file='dataset/vocab.csv', num_oov_buckets=1, default_value=-1)
    text = features[commons.FEATURE_COL]
    words = tf.string_split(text)
    dense_words = tf.sparse_tensor_to_dense(words, default_value=commons.PAD_WORD)
    word_ids = vocab_table.lookup(dense_words)

    padding = tf.constant([[0, 0], [0, commons.MAX_DOCUMENT_LENGTH]])
    # Pad all the word_ids entries to the maximum document length
    word_ids_padded = tf.pad(word_ids, padding)
    word_id_vector = tf.slice(word_ids_padded, [0, 0], [-1, commons.MAX_DOCUMENT_LENGTH])

    embedding_matrix = word_embeddings_matrix()

    if mode == tf.estimator.ModeKeys.TRAIN:
    tf.keras.backend.set_learning_phase(True)
    else:
    tf.keras.backend.set_learning_phase(False)

    # embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
    # 10, input_length=commons.MAX_DOCUMENT_LENGTH)(word_id_vector)

    embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
    300,
    weights=[embedding_matrix],
    input_length=commons.MAX_DOCUMENT_LENGTH,
    trainable=True)(word_id_vector)


    conv = tf.keras.layers.Conv1D(filters=64, kernel_size=2, activation='relu')(embedded_sequences)
    pool = tf.keras.layers.GlobalAveragePooling1D()(conv)
    drop = tf.keras.layers.Dropout(0.5)(pool)

    logits = tf.keras.layers.Dense(commons.TARGET_SIZE, activation=None)(drop)

    predictions = tf.nn.softmax(logits)
    prediction_indices = tf.argmax(predictions, axis=1)









    share|improve this question

























      0












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      0








      I am currently trying to use my own pre-trained word embeddings in my tensorflow model_fn, but after a single epoch, the model building fails due to the following error;



      ValueError: Fetch argument <tf.Variable 'embedding/embeddings:0' shape=(86565, 300) dtype=float32_ref> cannot be interpreted a
      s a Tensor. (Tensor Tensor("embedding/embeddings:0", shape=(86565, 300), dtype=float32_ref) is not an element of this graph.)


      How do I modify my code in order to maintain the embeddings in the graph over several epochs? Should I be initializing them in a different way? Or outside of the model function?



      def word_embeddings_matrix():

      ..... load my embeddings .....

      return embedding_matrix


      embedding_matrix = word_embeddings_matrix()


      def model_fn(features, labels, mode, params):

      vocab_table = lookup.index_table_from_file(vocabulary_file='dataset/vocab.csv', num_oov_buckets=1, default_value=-1)
      text = features[commons.FEATURE_COL]
      words = tf.string_split(text)
      dense_words = tf.sparse_tensor_to_dense(words, default_value=commons.PAD_WORD)
      word_ids = vocab_table.lookup(dense_words)

      padding = tf.constant([[0, 0], [0, commons.MAX_DOCUMENT_LENGTH]])
      # Pad all the word_ids entries to the maximum document length
      word_ids_padded = tf.pad(word_ids, padding)
      word_id_vector = tf.slice(word_ids_padded, [0, 0], [-1, commons.MAX_DOCUMENT_LENGTH])

      embedding_matrix = word_embeddings_matrix()

      if mode == tf.estimator.ModeKeys.TRAIN:
      tf.keras.backend.set_learning_phase(True)
      else:
      tf.keras.backend.set_learning_phase(False)

      # embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
      # 10, input_length=commons.MAX_DOCUMENT_LENGTH)(word_id_vector)

      embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
      300,
      weights=[embedding_matrix],
      input_length=commons.MAX_DOCUMENT_LENGTH,
      trainable=True)(word_id_vector)


      conv = tf.keras.layers.Conv1D(filters=64, kernel_size=2, activation='relu')(embedded_sequences)
      pool = tf.keras.layers.GlobalAveragePooling1D()(conv)
      drop = tf.keras.layers.Dropout(0.5)(pool)

      logits = tf.keras.layers.Dense(commons.TARGET_SIZE, activation=None)(drop)

      predictions = tf.nn.softmax(logits)
      prediction_indices = tf.argmax(predictions, axis=1)









      share|improve this question














      I am currently trying to use my own pre-trained word embeddings in my tensorflow model_fn, but after a single epoch, the model building fails due to the following error;



      ValueError: Fetch argument <tf.Variable 'embedding/embeddings:0' shape=(86565, 300) dtype=float32_ref> cannot be interpreted a
      s a Tensor. (Tensor Tensor("embedding/embeddings:0", shape=(86565, 300), dtype=float32_ref) is not an element of this graph.)


      How do I modify my code in order to maintain the embeddings in the graph over several epochs? Should I be initializing them in a different way? Or outside of the model function?



      def word_embeddings_matrix():

      ..... load my embeddings .....

      return embedding_matrix


      embedding_matrix = word_embeddings_matrix()


      def model_fn(features, labels, mode, params):

      vocab_table = lookup.index_table_from_file(vocabulary_file='dataset/vocab.csv', num_oov_buckets=1, default_value=-1)
      text = features[commons.FEATURE_COL]
      words = tf.string_split(text)
      dense_words = tf.sparse_tensor_to_dense(words, default_value=commons.PAD_WORD)
      word_ids = vocab_table.lookup(dense_words)

      padding = tf.constant([[0, 0], [0, commons.MAX_DOCUMENT_LENGTH]])
      # Pad all the word_ids entries to the maximum document length
      word_ids_padded = tf.pad(word_ids, padding)
      word_id_vector = tf.slice(word_ids_padded, [0, 0], [-1, commons.MAX_DOCUMENT_LENGTH])

      embedding_matrix = word_embeddings_matrix()

      if mode == tf.estimator.ModeKeys.TRAIN:
      tf.keras.backend.set_learning_phase(True)
      else:
      tf.keras.backend.set_learning_phase(False)

      # embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
      # 10, input_length=commons.MAX_DOCUMENT_LENGTH)(word_id_vector)

      embedded_sequences = tf.keras.layers.Embedding(params.N_WORDS,
      300,
      weights=[embedding_matrix],
      input_length=commons.MAX_DOCUMENT_LENGTH,
      trainable=True)(word_id_vector)


      conv = tf.keras.layers.Conv1D(filters=64, kernel_size=2, activation='relu')(embedded_sequences)
      pool = tf.keras.layers.GlobalAveragePooling1D()(conv)
      drop = tf.keras.layers.Dropout(0.5)(pool)

      logits = tf.keras.layers.Dense(commons.TARGET_SIZE, activation=None)(drop)

      predictions = tf.nn.softmax(logits)
      prediction_indices = tf.argmax(predictions, axis=1)






      python tensorflow






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      asked Nov 23 '18 at 16:00









      chattrat423chattrat423

      2681319




      2681319
























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