parsing the csv file with multiline fields in pyspark












0














Facing an issue while reading the test2.csv file in pyspark.



Test file test1.csv



a1^b1^c1^d1^e1
a2^"this is having
multiline data1
multiline data2"^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Test file test2.csv



a1^b1^c1^d1^e1
a2^this is having
multiline data1
multiline data2^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Below is the Code



schema = StructType([
StructField("A", StringType()),
StructField("B", StringType()),
StructField("C", StringType()),
StructField("D", StringType()),
StructField("E", StringType())
])


Creating the dataframe for the above 2 csv files.



df1=spark.read.csv("s3_path/test1.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df1.show(10,False)
print ('df1.count() is: ', df1.count())



Below is the output when I read the test1.csv file
+---+-----------------------------------------------+---+---+---+
|A |B |C |D |E |
+---+-----------------------------------------------+---+---+---+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having
multiline data1
multiline data2|c2 |d2 |e2 |
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---+-----------------------------------------------+---+---+---+

df1.count() is: 4



df2 = spark.read.csv("s3_path/test2.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df2.show(10,False)
print ('df2.count() is: ', df2.count())


Below is the output when I read the test2.csv file
+---------------+---------------+----+----+----+
|A |B |C |D |E |
+---------------+---------------+----+----+----+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having |null|null|null|
|multiline data1|null |null|null|null|
|multiline data2|c2 |d2 |e2 |null|
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---------------+---------------+----+----+----+

df2.count() is: 6


Source Files:
If we see the difference in source files. test1.csv has " at the beginning and end of the multiline data. But test2.csv doesnt have that.



Issue Description: Column B, 2nd row has multiline data. If we see the output of the df2, it has 6 records, here spark is reading it as new record which is not correct.
The output of the df1 has 4 records, the multiline data in column B 2nd row is treated as one string which is correct.



Question : Can someone help to fix the code to read the test2.csv file as well correctly.










share|improve this question
























  • I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
    – Prakash S
    Nov 20 at 10:29










  • @PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
    – user10678179
    Nov 21 at 19:07












  • Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
    – user10678179
    Nov 21 at 19:18
















0














Facing an issue while reading the test2.csv file in pyspark.



Test file test1.csv



a1^b1^c1^d1^e1
a2^"this is having
multiline data1
multiline data2"^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Test file test2.csv



a1^b1^c1^d1^e1
a2^this is having
multiline data1
multiline data2^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Below is the Code



schema = StructType([
StructField("A", StringType()),
StructField("B", StringType()),
StructField("C", StringType()),
StructField("D", StringType()),
StructField("E", StringType())
])


Creating the dataframe for the above 2 csv files.



df1=spark.read.csv("s3_path/test1.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df1.show(10,False)
print ('df1.count() is: ', df1.count())



Below is the output when I read the test1.csv file
+---+-----------------------------------------------+---+---+---+
|A |B |C |D |E |
+---+-----------------------------------------------+---+---+---+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having
multiline data1
multiline data2|c2 |d2 |e2 |
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---+-----------------------------------------------+---+---+---+

df1.count() is: 4



df2 = spark.read.csv("s3_path/test2.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df2.show(10,False)
print ('df2.count() is: ', df2.count())


Below is the output when I read the test2.csv file
+---------------+---------------+----+----+----+
|A |B |C |D |E |
+---------------+---------------+----+----+----+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having |null|null|null|
|multiline data1|null |null|null|null|
|multiline data2|c2 |d2 |e2 |null|
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---------------+---------------+----+----+----+

df2.count() is: 6


Source Files:
If we see the difference in source files. test1.csv has " at the beginning and end of the multiline data. But test2.csv doesnt have that.



Issue Description: Column B, 2nd row has multiline data. If we see the output of the df2, it has 6 records, here spark is reading it as new record which is not correct.
The output of the df1 has 4 records, the multiline data in column B 2nd row is treated as one string which is correct.



Question : Can someone help to fix the code to read the test2.csv file as well correctly.










share|improve this question
























  • I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
    – Prakash S
    Nov 20 at 10:29










  • @PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
    – user10678179
    Nov 21 at 19:07












  • Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
    – user10678179
    Nov 21 at 19:18














0












0








0







Facing an issue while reading the test2.csv file in pyspark.



Test file test1.csv



a1^b1^c1^d1^e1
a2^"this is having
multiline data1
multiline data2"^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Test file test2.csv



a1^b1^c1^d1^e1
a2^this is having
multiline data1
multiline data2^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Below is the Code



schema = StructType([
StructField("A", StringType()),
StructField("B", StringType()),
StructField("C", StringType()),
StructField("D", StringType()),
StructField("E", StringType())
])


Creating the dataframe for the above 2 csv files.



df1=spark.read.csv("s3_path/test1.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df1.show(10,False)
print ('df1.count() is: ', df1.count())



Below is the output when I read the test1.csv file
+---+-----------------------------------------------+---+---+---+
|A |B |C |D |E |
+---+-----------------------------------------------+---+---+---+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having
multiline data1
multiline data2|c2 |d2 |e2 |
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---+-----------------------------------------------+---+---+---+

df1.count() is: 4



df2 = spark.read.csv("s3_path/test2.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df2.show(10,False)
print ('df2.count() is: ', df2.count())


Below is the output when I read the test2.csv file
+---------------+---------------+----+----+----+
|A |B |C |D |E |
+---------------+---------------+----+----+----+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having |null|null|null|
|multiline data1|null |null|null|null|
|multiline data2|c2 |d2 |e2 |null|
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---------------+---------------+----+----+----+

df2.count() is: 6


Source Files:
If we see the difference in source files. test1.csv has " at the beginning and end of the multiline data. But test2.csv doesnt have that.



Issue Description: Column B, 2nd row has multiline data. If we see the output of the df2, it has 6 records, here spark is reading it as new record which is not correct.
The output of the df1 has 4 records, the multiline data in column B 2nd row is treated as one string which is correct.



Question : Can someone help to fix the code to read the test2.csv file as well correctly.










share|improve this question















Facing an issue while reading the test2.csv file in pyspark.



Test file test1.csv



a1^b1^c1^d1^e1
a2^"this is having
multiline data1
multiline data2"^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Test file test2.csv



a1^b1^c1^d1^e1
a2^this is having
multiline data1
multiline data2^c2^d2^e2
a3^b3^c3^d3^e3
a4^b4^c4^d4^e4


Below is the Code



schema = StructType([
StructField("A", StringType()),
StructField("B", StringType()),
StructField("C", StringType()),
StructField("D", StringType()),
StructField("E", StringType())
])


Creating the dataframe for the above 2 csv files.



df1=spark.read.csv("s3_path/test1.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df1.show(10,False)
print ('df1.count() is: ', df1.count())



Below is the output when I read the test1.csv file
+---+-----------------------------------------------+---+---+---+
|A |B |C |D |E |
+---+-----------------------------------------------+---+---+---+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having
multiline data1
multiline data2|c2 |d2 |e2 |
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---+-----------------------------------------------+---+---+---+

df1.count() is: 4



df2 = spark.read.csv("s3_path/test2.csv",schema=schema,inferSchema=True,multiLine=True,sep='^')
df2.show(10,False)
print ('df2.count() is: ', df2.count())


Below is the output when I read the test2.csv file
+---------------+---------------+----+----+----+
|A |B |C |D |E |
+---------------+---------------+----+----+----+
|a1 |b1 |c1 |d1 |e1 |
|a2 |this is having |null|null|null|
|multiline data1|null |null|null|null|
|multiline data2|c2 |d2 |e2 |null|
|a3 |b3 |c3 |d3 |e3 |
|a4 |b4 |c4 |d4 |e4 |
+---------------+---------------+----+----+----+

df2.count() is: 6


Source Files:
If we see the difference in source files. test1.csv has " at the beginning and end of the multiline data. But test2.csv doesnt have that.



Issue Description: Column B, 2nd row has multiline data. If we see the output of the df2, it has 6 records, here spark is reading it as new record which is not correct.
The output of the df1 has 4 records, the multiline data in column B 2nd row is treated as one string which is correct.



Question : Can someone help to fix the code to read the test2.csv file as well correctly.







regex apache-spark pyspark apache-spark-sql






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Nov 25 at 10:53

























asked Nov 20 at 6:00









user10678179

12




12












  • I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
    – Prakash S
    Nov 20 at 10:29










  • @PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
    – user10678179
    Nov 21 at 19:07












  • Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
    – user10678179
    Nov 21 at 19:18


















  • I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
    – Prakash S
    Nov 20 at 10:29










  • @PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
    – user10678179
    Nov 21 at 19:07












  • Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
    – user10678179
    Nov 21 at 19:18
















I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
– Prakash S
Nov 20 at 10:29




I guess column qualifier (single or double quotes) is made necessary for a csv file for the purpose of escaping the delimeter itself. But you can give a try for the "quote" option in the read.csv method.
– Prakash S
Nov 20 at 10:29












@PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
– user10678179
Nov 21 at 19:07






@PrakashS options quote parameter is not solving the purpose here, It works like below. Test file: a1^b1^c1^d1^e1 a2^$its a single line ^data$^c2^d2^e2 a3^b3^c3^d3^e3 a4^b4^c4^d4^e4 spark.read.option('quote','$').option("multiLine","true").option("inferSchema", "true").schema(schema).option("sep","^").option("header", "false").csv("s3://aria-preprod.snowflake.stg/pca/volatility/spark_issue/testy.csv").show(10,False)
– user10678179
Nov 21 at 19:07














Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
– user10678179
Nov 21 at 19:18




Output: ` +---+---------------------+---+---+---+ |A |B |C |D |E | +---+---------------------+---+---+---+ |a1 |b1 |c1 |d1 |e1 | |a2 |its a single line ^data|c2 |d2 |e2 | |a3 |b3 |c3 |d3 |e3 | |a4 |b4 |c4 |d4 |e4 | +---+---------------------+---+---+---+ `
– user10678179
Nov 21 at 19:18

















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