compare cv score from cross_val_score and xgb.cv











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I am trying to select a good model, say between Random Forest and XGB. For that, I do this:




  • stratified KFold (from model_selection)

  • cross_val_score (from model_selection)

  • get mean cv score for Random Forest classifier.


For XGB, even though I could do same as above, I want to use xgb.cv and Dtrain matrices - as they claim that is much faster and efficient. So, I did this:




  • xgtrain = xgb.Dtrain(X, label=y)

  • xgb_cv_results is a dataframe...with appropriate metric (I used 'mlogloss' with 'objective': 'multi:softprob').


Now, since the two cv scoring are different, I am not in a position to compare the scores to select the best model. How can I get similar scoring methods in cross_val_score and xgb.cv ? In other words, is the common scoring mechanism such as 'accuracy' or 'neg_log_loss' in both the cv methods?



Here, the metric is very different from scoring parameter seen in cross_val_score. Here, I am dealing with multi-class classification. And, I need to see soft probabilities ('multi:softprob'). With this option, I cannot use 'auc' as my metric (there is a known bug in XGBoost - for multi-class classification, it does not do proper checking of X and y) and errors out.



Any ideas?










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    up vote
    0
    down vote

    favorite












    I am trying to select a good model, say between Random Forest and XGB. For that, I do this:




    • stratified KFold (from model_selection)

    • cross_val_score (from model_selection)

    • get mean cv score for Random Forest classifier.


    For XGB, even though I could do same as above, I want to use xgb.cv and Dtrain matrices - as they claim that is much faster and efficient. So, I did this:




    • xgtrain = xgb.Dtrain(X, label=y)

    • xgb_cv_results is a dataframe...with appropriate metric (I used 'mlogloss' with 'objective': 'multi:softprob').


    Now, since the two cv scoring are different, I am not in a position to compare the scores to select the best model. How can I get similar scoring methods in cross_val_score and xgb.cv ? In other words, is the common scoring mechanism such as 'accuracy' or 'neg_log_loss' in both the cv methods?



    Here, the metric is very different from scoring parameter seen in cross_val_score. Here, I am dealing with multi-class classification. And, I need to see soft probabilities ('multi:softprob'). With this option, I cannot use 'auc' as my metric (there is a known bug in XGBoost - for multi-class classification, it does not do proper checking of X and y) and errors out.



    Any ideas?










    share|improve this question


























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I am trying to select a good model, say between Random Forest and XGB. For that, I do this:




      • stratified KFold (from model_selection)

      • cross_val_score (from model_selection)

      • get mean cv score for Random Forest classifier.


      For XGB, even though I could do same as above, I want to use xgb.cv and Dtrain matrices - as they claim that is much faster and efficient. So, I did this:




      • xgtrain = xgb.Dtrain(X, label=y)

      • xgb_cv_results is a dataframe...with appropriate metric (I used 'mlogloss' with 'objective': 'multi:softprob').


      Now, since the two cv scoring are different, I am not in a position to compare the scores to select the best model. How can I get similar scoring methods in cross_val_score and xgb.cv ? In other words, is the common scoring mechanism such as 'accuracy' or 'neg_log_loss' in both the cv methods?



      Here, the metric is very different from scoring parameter seen in cross_val_score. Here, I am dealing with multi-class classification. And, I need to see soft probabilities ('multi:softprob'). With this option, I cannot use 'auc' as my metric (there is a known bug in XGBoost - for multi-class classification, it does not do proper checking of X and y) and errors out.



      Any ideas?










      share|improve this question















      I am trying to select a good model, say between Random Forest and XGB. For that, I do this:




      • stratified KFold (from model_selection)

      • cross_val_score (from model_selection)

      • get mean cv score for Random Forest classifier.


      For XGB, even though I could do same as above, I want to use xgb.cv and Dtrain matrices - as they claim that is much faster and efficient. So, I did this:




      • xgtrain = xgb.Dtrain(X, label=y)

      • xgb_cv_results is a dataframe...with appropriate metric (I used 'mlogloss' with 'objective': 'multi:softprob').


      Now, since the two cv scoring are different, I am not in a position to compare the scores to select the best model. How can I get similar scoring methods in cross_val_score and xgb.cv ? In other words, is the common scoring mechanism such as 'accuracy' or 'neg_log_loss' in both the cv methods?



      Here, the metric is very different from scoring parameter seen in cross_val_score. Here, I am dealing with multi-class classification. And, I need to see soft probabilities ('multi:softprob'). With this option, I cannot use 'auc' as my metric (there is a known bug in XGBoost - for multi-class classification, it does not do proper checking of X and y) and errors out.



      Any ideas?







      cross-validation xgbclassifier






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      edited Nov 16 at 21:24

























      asked Nov 16 at 21:13









      user1717931

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